Arduino IDE overwrites UIFlow Boot Loader?
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It looks like the Arduino IDE overwrites the M5StickC-Plus boot load that is installed by M5Burner?
I can see how this is probably expected behavior, if there's a way to avoid it that would be helpful.
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Unfortunately not. Arduino work on a lower level than MicroPython and so runs directly on the hardware. Micropython is an interpreted language and so need to install a boot loader/ interpreter to run.
It can be inconvenient to have to install the MP boot loader when you want to switch back but its now a simple process.